You are here:
Main content:
M.Sc. Kai Budde-Sagert
Personal Data
Research assistant in the Infrastructure Support Project of the CRC ELAINE (https://www.elaine.uni-rostock.de/en).
Curriculum Vitae
| Since 2022 | Research assistant in the Signal Theory and Digital Signal Processing Group at the Institute for Communications Engineering, University of Rostock, Germany |
| 2017 - 2022 | Doctoral researcher in the Modeling and Simulation Group at the Institute for Visual and Analytic Computing, University of Rostock, Germany |
| 2017 | Substitute Physics teacher, Gymnasium Reutershagen, Rostock, Germany |
| 2013 - 2016 | M.Sc. Physics, University of Rostock, Germany |
| 2014 - 2015 | Internship in the Data Analysis Group of Nordex SE, Hamburg, Germany |
| 2010 - 2013 | B.Sc. Physics, University of Rostock, Germany |
| 2009 - 2010 | Interdisciplinary Sciences (passed first year examinations), ETH Zurich, Switzerland |
Research Interests
- Research data management
- Reproducible data analysis
- Provenance of research data and simulation studies
- Electrical stimulation of cells and tissue
- Regenerative Medicine
Publications
Articles:
1.
Wilsdorf, P.; Heller, J.; Budde, K.; Zimmermann, J.; Warnke, T.; Haubelt, C.; Timmermann, D.; van Rienen, U.; Uhrmacher, A. M.:
A Model-Driven Approach for Conducting Simulation Experiments. In: Applied Sciences, vol. 12, no. 16 (8/2022)
ISSN: 2076-3417, doi:10.3390/app12167977
A Model-Driven Approach for Conducting Simulation Experiments. In: Applied Sciences, vol. 12, no. 16 (8/2022)
ISSN: 2076-3417, doi:10.3390/app12167977
2.
Zimmermann, J.; Budde, K.; Arbeiter, N.; Molina, F.; Storch, A.; Uhrmacher, A. M.; van Rienen, U.:
Using a digital twin of an electrical stimulation device to monitor and control the electrical stimulation of cells in vitro. In: Frontiers in Bioengineering and Biotechnology, vol. 9 (12/2021)
ISSN: 2296-4185, doi:10.3389/fbioe.2021.765516
Using a digital twin of an electrical stimulation device to monitor and control the electrical stimulation of cells in vitro. In: Frontiers in Bioengineering and Biotechnology, vol. 9 (12/2021)
ISSN: 2296-4185, doi:10.3389/fbioe.2021.765516
3.
Budde, K.; Smith, J.; Wilsdorf, P.; Haack, F.; Uhrmacher, A. M.:
Relating simulation studies by provenance - Developing a family of Wnt signaling models. In: PLoS Computational Biology, vol. 17, no. 8 (8/2021)
doi:10.1371/journal.pcbi.1009227
Relating simulation studies by provenance - Developing a family of Wnt signaling models. In: PLoS Computational Biology, vol. 17, no. 8 (8/2021)
doi:10.1371/journal.pcbi.1009227
4.
Haack, F.; Budde, K.; Uhrmacher, A. M.:
Exploring mechanistic and temporal regulation of LRP6 endocytosis in canonical WNT signaling. In: Journal of Cell Science, vol. 133, no. 15 (8/2020)
ISSN: 0021-9533, doi:10.1242/jcs.243675
Exploring mechanistic and temporal regulation of LRP6 endocytosis in canonical WNT signaling. In: Journal of Cell Science, vol. 133, no. 15 (8/2020)
ISSN: 0021-9533, doi:10.1242/jcs.243675
Contributions to Proceedings:
5.
Wilsdorf, P.; Haack, F.; Budde, K.; Ruscheinski, A.; Uhrmacher, A. M.:
Conducting Systematic, Partly Automated Simulation Studies - Unde Venis et Quo Vadis. 17th International Conference of Numerical Analysis and Applied Mathematics, p. 020001, Rhodes, Greece, 2020
doi:10.1063/5.0026939
Conducting Systematic, Partly Automated Simulation Studies - Unde Venis et Quo Vadis. 17th International Conference of Numerical Analysis and Applied Mathematics, p. 020001, Rhodes, Greece, 2020
doi:10.1063/5.0026939
6.
Budde, K.; Neuhaus, E.; Molina, F.; Zimmermann, J.; Arbeiter, N.; Storch, A.; van Rienen, U.; Uhrmacher, A. M.:
Documenting an Electrical Cell Stimulation Experiment - Guidelines at Work. Conference on Progress in Electrically Active Implants Tissue and Functional Regeneration (ELAINE 2020), pp. 21-21, Rostock, Germany, 2020
doi:10.18453/rosdok_id00002752
Documenting an Electrical Cell Stimulation Experiment - Guidelines at Work. Conference on Progress in Electrically Active Implants Tissue and Functional Regeneration (ELAINE 2020), pp. 21-21, Rostock, Germany, 2020
doi:10.18453/rosdok_id00002752
7.
Budde, K.; Wilsdorf, P.; Smith, J.; Haack, F.; Ruscheinski, A.; Uhrmacher, A. M.:
Reusing provenance information captured in WebProv for automatic generation of experiment specifications. Integrative pathway modeling in systems biology and systems medicine (INCOME 2019), Berlin, Germany, 2019
Reusing provenance information captured in WebProv for automatic generation of experiment specifications. Integrative pathway modeling in systems biology and systems medicine (INCOME 2019), Berlin, Germany, 2019
8.
Budde, K.; Zimmermann, J.; Neuhaus, E.; Schröder, M.; Uhrmacher, A. M.; van Rienen, U.:
Requirements for Documenting Electrical Cell Stimulation Experiments for Replicability and Numerical Modeling. 41st International Engineering in Medicine and Biology Conference (EMBC), pp. 1082-108, Berlin, Germany, 2019
doi:10.1109/embc.2019.8856863
Requirements for Documenting Electrical Cell Stimulation Experiments for Replicability and Numerical Modeling. 41st International Engineering in Medicine and Biology Conference (EMBC), pp. 1082-108, Berlin, Germany, 2019
doi:10.1109/embc.2019.8856863
9.
Budde, K.; Smith, J.; Ruscheinski, A.; Uhrmacher, A. M.:
WebProv: A web-based tool to access, store, and display provenance information of simulation models. 10th "Computational Modeling in Biology Network" (COMBINE) Meeting, Heidelberg, Germany, 2019
WebProv: A web-based tool to access, store, and display provenance information of simulation models. 10th "Computational Modeling in Biology Network" (COMBINE) Meeting, Heidelberg, Germany, 2019
10.
Ruscheinski, A.; Budde, K.; Warnke, T.; Wilsdorf, P.; Hiller, B. C.; Dombrowsky, M.; Uhrmacher, A. M.:
Generating Simulation Experiments Based on Model Documentations and Templates. Winter Simulation Conference (WSC 2018), pp. 715-726, Gothenburg, Sweden, 2018
doi:10.1109/WSC.2018.8632515
Generating Simulation Experiments Based on Model Documentations and Templates. Winter Simulation Conference (WSC 2018), pp. 715-726, Gothenburg, Sweden, 2018
doi:10.1109/WSC.2018.8632515
11.
Budde, K.; Helms, T.; Haack, F.; Uhrmacher, A. M.:
Modeling long-range Wnt signaling with the domain-specific language ML-Rules. Workshop on "Multiscale modeling and simulations to bridge molecular and cellular scales" of the Centro di Ricerca Matematica Ennio De Giorgi, Pisa, Italy, 2018
Modeling long-range Wnt signaling with the domain-specific language ML-Rules. Workshop on "Multiscale modeling and simulations to bridge molecular and cellular scales" of the Centro di Ricerca Matematica Ennio De Giorgi, Pisa, Italy, 2018
12.
Budde, K.; Krummrich, E.; Ruscheinski, A.; Wilsdorf, P.; Haack, F.; Uhrmacher, A. M.:
The Story Behind Wnt Simulation Models: Interrelating Wnt Models by Provenance Information. European Wnt Meeting 2018, Heidelberg, Germany, 2018
The Story Behind Wnt Simulation Models: Interrelating Wnt Models by Provenance Information. European Wnt Meeting 2018, Heidelberg, Germany, 2018
13.
Ruscheinski, A.; Gjorgevikj, D.; Dombrowsky, M.; Budde, K.; Uhrmacher, A. M.:
Towards a PROV Ontology for Simulation Models. 7th International Provenance and Annotation Workshop (IPAW), pp. 192-195, London, UK, 2018
Towards a PROV Ontology for Simulation Models. 7th International Provenance and Annotation Workshop (IPAW), pp. 192-195, London, UK, 2018
14.
Budde, K.; Warnke, T.; Uhrmacher, A. M.; Schätz, E.; Starke, J.; Haack, F.:
Exploiting equation-free analysis for multi-level, agent-based models in cell biology. Winter Simulation Conference (WSC 2017), pp. 4564-4565, Las Vegas, NV, USA, 2017
ISSN: 1558-4305, doi:10.1109/WSC.2017.8248206
Exploiting equation-free analysis for multi-level, agent-based models in cell biology. Winter Simulation Conference (WSC 2017), pp. 4564-4565, Las Vegas, NV, USA, 2017
ISSN: 1558-4305, doi:10.1109/WSC.2017.8248206